Publications

Calie, P.J., Lee, S., and Hicks, E.  2005.  The bioinformatic enhancement of exercises in Drosophila genetics with a subtle exposure to evolutionary theory.  Submitted to The American Biology Teacher (in review).

Calie, P.J., Shackleford, C., Caicedo, J., and Naczi, R.F.C. 2005. High levels of seed inviability among seven populations of the endangered Short's goldenrod (Solidago shortii - Asteraceae).  Sida (in review).

Smith, B.D., Denham, A.J., Beck, J.B., and Calie, P.J. 2004. High resolution GIS mapping and current status of the ten viable populations of Short’s goldenrod (Solidago shortii – Asteraceae) in Kentucky.  Sida 21: 1121-1130.

Calie, P.J. 2004. A mutant hunt using the C-Fern (Ceratopteris richardii). The American Biology Teacher 67: 295-299.

Beck, J.B., Nesom, G., Calie, P.J., Small, R.K., and Schilling, E.S. 2004. Is Solidagininae monophyletic? Taxon 53: 691-698 .

Millen, R.A., Olmstead, R.G., Adams, K.L., Palmer, J.D., Lao,N.T., Heggie,L., Kavanaugh, T.A., Hibberd,J.M.,Gray, J.C., Morden,C.W., Calie, P.J., Jermiin, L.S., and Wolfe, K.D. 2001. Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus. The Plant Cell 13: 645-658.

Beck, J.B., Naczi, R.F.C., and Calie, P.J. 2001. Insights into the species delineation and population structure of Solidago shortii (Asteraceae) through morphometric analysis. Rhodora 103: 151-171.

Beck, J.B., Naczi, R.F.C., and Calie, P.J. 1999. Lectotypification of Solidago shortii (Asteraceae) with considerations of the historical and intellectual circumstances surrounding the original species description. Harvard Papers in Botany 4: 417-427.

Brown, C.K., Kuhlman, P., Mattingly, S.R., Slates, K., Calie, P.J., and Farrar, W.W. 1998. A model of the quaternary structure of enolases, based on structural and evolutionary analysis of the octomeric enolase from Bacillus subtilis. Protein Science 17: 855-866.

Calie, P.J., and Manhart, J.R. 1994. The rbcL stem-loop regulatory region is highly conserved in the angiosperms but remarkably divergent in the non-flowering land plants and algae. Gene 146: 251-256.

Downie, S.R., Katz-Downie, D.S., Wolfe, K.H., Calie, P.J., and Palmer, J.D. 1994. Structure and evolution of the largest chloroplast gene: optional modules and multiple gene loss during angiosperm evolution. Curr. Genet. 25: 367-378.

Blomfield, I.C., Calie, P.J., Eberhardt, K.J., McClain, M.S., and Eisenstein, B.I. 1993. Lrp stimulates phase variation of type 1 fimbriation in Escherichia coli K-12. J. Bact. 175: 27-36.

Gantt, S.J., Baldauf, S.L., Calie, P.J., Weeden, N.J., and Palmer, J.D. 1991. Transfer of rpl22 to the nucleus greatly preceded its loss from the chloroplast and involved the gain of an intron. EMBO J. 10: 3073-3078.

Blomfield, I.C., McClain, M.S., Princ, J.A., Calie, P.J., and Eisenstein, B.I. 1991. Type I fimbriation in fimE mutants of Escherichia coli K-12. J. Bact. 173: 5298-5307.

Price, R.A., Calie, P.J., Downie, S.R., Logsdon, J.M. Jr., and Palmer, J.D. 1990. Chloroplast DNA variation in the Geraniaceae - a preliminary report. In: Proceedings of the International Geraniaceae Symposium (P. Vorster, ed.). Stellenbosch, So. Afr. pp. 235 -244.

Palmer, J.D., Calie, P.J., dePamphilis, C.W., Logsdon, J.M. Jr., Katz-Downie, D.S., and Downie, S.R. 1990. An evolutionary genetic approach to understanding plastid gene function: Lessons from photosynthetic and nonphotosynthetic plants. In: Proceedings of the VIIIth International Congress on Photosynthesis. Kluwer Academic Publ., Dordrecht, The Netherlands. pp. 475-482.

Palmer, J.D., Baldauf, S.L., Calie, P.J., and dePamphilis, C.W. 1990. Chloroplast gene instability and transfer to the nucleus. In: Molecular Evolution - UCLA Symposia on Molecular and Cellular Biology, (eds. M. Clegg and S. O'Brien) New Ser. vol. 122, pp. 97-106.

Calie, P.J., and Hughes, K.W. 1987. The consensus angiosperm chloroplast gene order is conserved in the moss Physcomitrella patens. Mol. Gen. Genet. 208: 335-341.

Calie, P.J., and Hughes, K.W. 1986. A rapid and efficient protocol for the isolation and purification of chloroplast DNA from moss gametophyte tissue. Plant Mol. Biol. Reporter 4: 206-212.

Calie, P.J., Schilling, E.E. and Webb, D.H. 1983. Flavonoid chemistry of the generic segregates Ascyrum and Crookea of Hypericum. Biochem. Syst. and Ecol. 11: 107-109.

Lewis, E.J., Calie, P.J. and Wicks, W.D. 1982. Differences in rates of tyrosine aminotransferase deinduction with cyclic AMP and glucocorticoids. Proc. Natl. Acad. Sci. (USA) 79: 5778 5782.

Schilling, E.E., and Calie, P.J. 1982. Petal flavonoids of white-flowered spring ephemerals. Bull. Torr. Bot. Club 109: 7-12.

Calie, P.J. 1981. Systematic studies in Sedum section Ternata. Brittonia 33: 498-507